PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3963_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 604aa    MW: 67695.2 Da    PI: 5.0961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3963_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-15414460455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h   Er+RR+++N++f +Lr+++P+       K +K++iL  +++Y+++Lq
  RrC3963_p1 414 NHALSERKRREKLNDRFMTLRSIIPST-----SKIDKVSILDDTIDYLQELQ 460
                 79999*********************7.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.2E-5213202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.155410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12414460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18414479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-16414464No hitNo description
Gene3DG3DSA:4.10.280.107.5E-18414471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MTTGEKRTVP ENLKKHLAVS VRNIQWSYGI FWSISASQPG MLEWGDGYYN GDIKTRKTIQ  60
AVEVKADQLG LERSEQLREL YESLSLADSS TSGGSQVSRR ASASALSPED LTDTEWYYLV  120
CMSFVFNIGE GITGGALANG EPIWLCNAHT ADSKVFIRSL LAKSASLLTV VCFPFLGGVL  180
EIGTTEHITE DLNVIQCVKT LFLEAHPYGT ISTRSDYQEI FDPLNSDKYI PVFGTEAFPT  240
TSTSGFEQEL EDHDSFINGG NASQVQSWQF VGEELNNCVH QPLNSSDCVS QTLVGTTGRV  300
SCNPRKSRTQ RLGQIQEQSN RLNMDNDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT  360
RWRRSSLSAK TLGEKSQNMI KKIIFEVPRM HQKELLLPDT PEDNMFKVGD ETGNHALSER  420
KRREKLNDRF MTLRSIIPST SKIDKVSILD DTIDYLQELQ RRVQELESCR EYTDTDMRMP  480
TKRKKPEDED ERASANCLNT KRKESDVNVG EDEPADTGYA GLTDNLRIGL FGNEVVIELR  540
CAWREGILLE IMDVISDLNL DSHSVQSSTG DGLLCLTVNC KHKGTKIATT GMIQEALQGV  600
AWIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-152620224192Transcription factor MYC3
4rs9_A3e-152620224192Transcription factor MYC3
4rqw_B3e-152620224192Transcription factor MYC3
4rqw_A3e-152620224192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418423ERKRRE
2419424RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532170.0AK353217.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-32-J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688436.10.0PREDICTED: transcription factor EGL1
RefseqXP_013688437.10.0PREDICTED: transcription factor EGL1
SwissprotQ9CAD00.0EGL1_ARATH; Transcription factor EGL1
TrEMBLA0A078F5I30.0A0A078F5I3_BRANA; BnaC09g12820D protein
STRINGBra027796.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.30.0bHLH family protein